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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Gary Carter | 1st | Milt May | Tied for 10th | 1st |
| First Basemen | John Olerud | 20th | John Mayberry | 6th | 12th |
| Second Basemen | Roberto Alomar | 3rd | Rickie Weeks | 4th | 1st |
| Third Basemen | Josh Donaldson | 12th | Ryon Healy | Tied for 5th | 6th |
| Shortstops | Álex Rodríguez | 6th | Dick Bartell | 16th | 16th |
| Left Fielders | Tim Raines | 18th | Warren Cromartie | 16th | 18th |
| Center Fielders | Rick Monday | 11th | Denard Span | Tied for 8th | 8th |
| Right Fielders | Larry Walker | 10th | Wee Willie Keeler | Tied for 5th | 7th |
| Starting Pitchers | Roy Halladay | 13th | Dan Haren | 6th | 11th |
| Relievers | Bill E Crouch | 16th | Arodys Vizcaíno | 15th | 15th |
| Closers | BJ Ryan | 6th | Mark Eichhorn | Tied for 4th | 6th |
